West Kenya Union Conference is organized into five local conferences and a Local Field. The territory is comprised of;
- North West Kenya Conference
- Greater Rift Valley Conference
- Central Nyanza Conference
- Kenya Lake Conference
- Ranen Conference
- Lake Victoria Field
North West Kenya Conference covers seven counties; Turkana County, West Pokot, Trans-nzoia, Bungoma, Busia, Kakamega and Vihiga county. Greater-Rift valley Conference; Baringo, Elgeyo Marakwet, Uashin Gishu and Nandi county. Central Nyanza Conference is curved within Siaya and Kisumu county. Kenya Lake Conference takes Part of Homa-bay County. Ranen Conference takes Part of Homa-bay and Migori County. Lake Victoria field covers Part of Homabay and Migori County.